HL_8PNN_209

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8PNN|1|sR|G|1243, 8PNN|1|sR|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_209 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.0829

The information below is about HL_8P9A_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8PNN|1|sR|A|1238
8PNN|1|sR|U|1239
8PNN|1|sR|U|1240
8PNN|1|sR|G|1241
8PNN|1|sR|A|1242
8PNN|1|sR|G|1243
8PNN|1|sR|A|1244
8PNN|1|sR|G|1245
8PNN|1|sR|C|1246
8PNN|1|sR|U|1247

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain d9

Small ribosomal subunit protein uS14A