HL_8PNN_213

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_213 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.0754

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8PNN|1|sR|U|1396
8PNN|1|sR|U|1397
8PNN|1|sR|U|1398
8PNN|1|sR|C|1399
8PNN|1|sR|A|1400
8PNN|1|sR|A|1401
8PNN|1|sR|G|1402

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A