HL_8PPK_003

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8PPK|1|2|A|158, 8PPK|1|2|U|160, 8PPK|1|2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1107

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PPK|1|2|G|156
8PPK|1|2|U|157
8PPK|1|2|A|158
8PPK|1|2|A2M|159
8PPK|1|2|U|160
8PPK|1|2|U|161
8PPK|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24