HL_8PPK_017

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_017 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.426

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PPK|1|2|U|885
8PPK|1|2|A|886
8PPK|1|2|U|887
8PPK|1|2|U|888
8PPK|1|2|U|889
8PPK|1|2|U|890
8PPK|1|2|G|891
8PPK|1|2|U|892
8PPK|1|2|U|893
8PPK|1|2|G|894
8PPK|1|2|G|895
8PPK|1|2|U|896
8PPK|1|2|U|897
8PPK|1|2|U|898
8PPK|1|2|U|899
8PPK|1|2|C|900
8PPK|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain L

40S ribosomal protein S11