HL_8PPK_020

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

8PPK|1|2|C|1057, 8PPK|1|2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2426

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8PPK|1|2|G|1054
8PPK|1|2|A|1055
8PPK|1|2|PSU|1056
8PPK|1|2|C|1057
8PPK|1|2|A|1058
8PPK|1|2|G|1059
8PPK|1|2|A|1060
8PPK|1|2|U|1061
8PPK|1|2|A|1062
8PPK|1|2|C|1063
8PPK|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain p

Eukaryotic translation initiation factor 1