HL_8PPL_003

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8PPL|1|A2|A|158, 8PPL|1|A2|U|160, 8PPL|1|A2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1298

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PPL|1|A2|G|156
8PPL|1|A2|U|157
8PPL|1|A2|A|158
8PPL|1|A2|A2M|159
8PPL|1|A2|U|160
8PPL|1|A2|U|161
8PPL|1|A2|C|162

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AY

40S ribosomal protein S24