HL_8PPL_004

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_004 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.1921

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8PPL|1|A2|U|197
8PPL|1|A2|U|198
8PPL|1|A2|C|199
8PPL|1|A2|G|200
8PPL|1|A2|C|201
8PPL|1|A2|G|202

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8