HL_8PPL_009

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8PPL|1|A2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_009 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0767

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PPL|1|A2|C|441
8PPL|1|A2|C|442
8PPL|1|A2|U|443
8PPL|1|A2|G|444
8PPL|1|A2|A|445
8PPL|1|A2|G|446
8PPL|1|A2|A|447
8PPL|1|A2|A|448
8PPL|1|A2|A|449
8PPL|1|A2|C|450
8PPL|1|A2|G|451
8PPL|1|A2|G|452

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AY

40S ribosomal protein S24