HL_8PPL_017

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_017 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4646

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PPL|1|A2|U|885
8PPL|1|A2|A|886
8PPL|1|A2|U|887
8PPL|1|A2|U|888
8PPL|1|A2|U|889
8PPL|1|A2|U|890
8PPL|1|A2|G|891
8PPL|1|A2|U|892
8PPL|1|A2|U|893
8PPL|1|A2|G|894
8PPL|1|A2|G|895
8PPL|1|A2|U|896
8PPL|1|A2|U|897
8PPL|1|A2|U|898
8PPL|1|A2|U|899
8PPL|1|A2|C|900
8PPL|1|A2|G|901

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AL

40S ribosomal protein S11