HL_8PPL_021
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UAUUCCCAUG
- Length
- 10 nucleotides
- Bulged bases
- 8PPL|1|A2|U|1120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PPL_021 not in the Motif Atlas
- Geometric match to HL_5T16_002
- Geometric discrepancy: 0.2496
- The information below is about HL_5T16_002
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8PPL|1|A2|U|1112
8PPL|1|A2|A|1113
8PPL|1|A2|U|1114
8PPL|1|A2|U|1115
8PPL|1|A2|C|1116
8PPL|1|A2|C|1117
8PPL|1|A2|C|1118
8PPL|1|A2|A|1119
8PPL|1|A2|U|1120
8PPL|1|A2|G|1121
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain Ab
- 40S ribosomal protein S27
- Chain Iu
- Eukaryotic translation initiation factor 3 subunit A
- Chain Ix
- Eukaryotic translation initiation factor 3 subunit D
- Chain Iy
- Eukaryotic translation initiation factor 3 subunit C
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