HL_8PPL_022

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_022 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0709

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PPL|1|A2|G|1141
8PPL|1|A2|G|1142
8PPL|1|A2|A|1143
8PPL|1|A2|A|1144
8PPL|1|A2|A|1145
8PPL|1|A2|C|1146

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AW

40S ribosomal protein S15a

Chain Aa

40S ribosomal protein S26