HL_8PPL_024
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8PPL|1|A2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PPL_024 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.0974
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8PPL|1|A2|G|1245
8PPL|1|A2|A|1246
8PPL|1|A2|C|1247
8PPL|1|A2|B8N|1248
8PPL|1|A2|C|1249
8PPL|1|A2|A|1250
8PPL|1|A2|A|1251
8PPL|1|A2|C|1252
8PPL|1|A2|A|1253
8PPL|1|A2|C|1254
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AP
- 40S ribosomal protein S15
- Chain AQ
- 40S ribosomal protein S16
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- Ubiquitin-40S ribosomal protein S27a
- Chain Iw
- Transfer RNA; tRNA
Coloring options: