HL_8PPL_029

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_029 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.2101

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8PPL|1|A2|C|1460
8PPL|1|A2|G|1461
8PPL|1|A2|U|1462
8PPL|1|A2|U|1463
8PPL|1|A2|C|1464
8PPL|1|A2|A|1465
8PPL|1|A2|G|1466

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AR

40S ribosomal protein S17

Chain Ac

40S ribosomal protein S28

Chain Ag

Receptor of activated protein C kinase 1

Chain Ix

Eukaryotic translation initiation factor 3 subunit D