HL_8PPL_038

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8PPL|1|A2|A|464

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_038 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.0985

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8PPL|1|A2|OMC|462
8PPL|1|A2|C|463
8PPL|1|A2|A|464
8PPL|1|A2|A|465
8PPL|1|A2|G|466
8PPL|1|A2|G|467

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6