HL_8PV2_008

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8PV2|1|C1|G|276, 8PV2|1|C1|A|277, 8PV2|1|C1|A|278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1028

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PV2|1|C1|U|271
8PV2|1|C1|U|272
8PV2|1|C1|U|273
8PV2|1|C1|G|274
8PV2|1|C1|G|275
8PV2|1|C1|G|276
8PV2|1|C1|A|277
8PV2|1|C1|A|278
8PV2|1|C1|U|279
8PV2|1|C1|G|280

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain La

60S ribosomal protein L28-like protein