HL_8PV2_018

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PV2|1|C1|U|719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_018 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1124

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8PV2|1|C1|C|717
8PV2|1|C1|U|718
8PV2|1|C1|U|719
8PV2|1|C1|C|720
8PV2|1|C1|G|721
8PV2|1|C1|G|722

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein