HL_8PV2_019

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8PV2|1|C1|A|747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_019 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.138

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8PV2|1|C1|G|745
8PV2|1|C1|U|746
8PV2|1|C1|A|747
8PV2|1|C1|U|748
8PV2|1|C1|U|749
8PV2|1|C1|C|750

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36