HL_8PV2_040
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CACUUCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV2_040 not in the Motif Atlas
- Geometric match to HL_7ENI_002
- Geometric discrepancy: 0.3904
- The information below is about HL_7ENI_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19413.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 9
Unit IDs
8PV2|1|C1|C|1739
8PV2|1|C1|A|1740
8PV2|1|C1|C|1741
8PV2|1|C1|U|1742
8PV2|1|C1|U|1743
8PV2|1|C1|C|1744
8PV2|1|C1|U|1745
8PV2|1|C1|G|1746
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LR
- Ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
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