HL_8PV2_054

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUCGCG

Length

7 nucleotides

Bulged bases

8PV2|1|C1|U|2529, 8PV2|1|C1|C|2532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_054 not in the Motif Atlas

Geometric match to HL_4V9F_005

Geometric discrepancy: 0.2389

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8PV2|1|C1|C|2527
8PV2|1|C1|U|2528
8PV2|1|C1|U|2529
8PV2|1|C1|C|2530
8PV2|1|C1|G|2531
8PV2|1|C1|C|2532
8PV2|1|C1|G|2533

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain LZ

60S ribosomal protein L27