HL_8PV2_058

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAG(OMU)G(OMU)G

Length

7 nucleotides

Bulged bases

8PV2|1|C1|G|2687, 8PV2|1|C1|G|2689

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_058 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1261

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PV2|1|C1|C|2685
8PV2|1|C1|A|2686
8PV2|1|C1|G|2687
8PV2|1|C1|OMU|2688
8PV2|1|C1|G|2689
8PV2|1|C1|OMU|2690
8PV2|1|C1|G|2691

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein