HL_8PV2_063

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UU(OMG)UUCA

Length

7 nucleotides

Bulged bases

8PV2|1|C1|U|2883

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_063 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2185

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PV2|1|C1|U|2879
8PV2|1|C1|U|2880
8PV2|1|C1|OMG|2881
8PV2|1|C1|U|2882
8PV2|1|C1|U|2883
8PV2|1|C1|C|2884
8PV2|1|C1|A|2885

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cd

Nucleolar GTP-binding protein 2

Chain LB

60S ribosomal protein L3-like protein