HL_8PV2_075

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_075 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.1906

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PV2|1|C2|G|124
8PV2|1|C2|U|125
8PV2|1|C2|A|126
8PV2|1|C2|U|127
8PV2|1|C2|U|128
8PV2|1|C2|C|129

Current chains

Chain C2

5.8S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain LX

60S ribosomal protein L25-like protein