HL_8PV4_009
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAAAUUUC
- Length
- 10 nucleotides
- Bulged bases
- 8PV4|1|C1|G|297, 8PV4|1|C1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0779
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8PV4|1|C1|G|296
8PV4|1|C1|G|297
8PV4|1|C1|U|298
8PV4|1|C1|A|299
8PV4|1|C1|A|300
8PV4|1|C1|A|301
8PV4|1|C1|U|302
8PV4|1|C1|U|303
8PV4|1|C1|U|304
8PV4|1|C1|C|305
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LN
- Ribosomal protein L15
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Li
- 60S ribosomal protein L36
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