RNA 3D Hub //

8PV4 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8PV4_0011/C1/39:46No text annotation
homologous
HL_8C3A_001
NA
HL_8PV4_0021/C1/70:75No text annotation
homologous
HL_8C3A_002
NA
HL_8PV4_0031/C1/91:97UNCG variation
geometric
HL_2CZJ_007
NA
HL_8PV4_0041/C1/130:135UNCG
geometric
HL_2HW8_001
HL_61337.3
HL_8PV4_0051/C1/188:195T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8PV4_0061/C1/202:206No text annotation
homologous
HL_5TBW_006
NA
HL_8PV4_0071/C1/210:218T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8PV4_0081/C1/271:280No text annotation
homologous
HL_8C3A_008
NA
HL_8PV4_0091/C1/296:305Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8PV4_0101/C1/350:355GNRA
homologous
HL_8C3A_010
NA
HL_8PV4_0111/C1/375:380GNRA
homologous
HL_8C3A_011
NA
HL_8PV4_0121/C1/456:461No text annotation
geometric
HL_5TBW_018
NA
HL_8PV4_0141/C1/589:593Mini UNCG
geometric
HL_6MSF_001
HL_90436.3
HL_8PV4_0811/C1/628:637No text annotation
geometric
HL_4TUE_219
NA
HL_8PV4_0161/C1/674:682No text annotation
homologous
HL_8C3A_015
NA
HL_8PV4_0171/C1/695:700GNRA
homologous
HL_8C3A_016
NA
HL_8PV4_0181/C1/717:722No text annotation
geometric
HL_7RQB_042
NA
HL_8PV4_0191/C1/745:750No text annotation
homologous
HL_8C3A_018
NA
HL_8PV4_0201/C1/826:831GNRA
homologous
HL_5TBW_019
NA
HL_8PV4_0821/C1/858:867No text annotation
homologous
HL_8C3A_020
NA
HL_8PV4_0221/C1/892:900No text annotation
homologous
HL_8C3A_021
NA
HL_8PV4_0261/C1/1109:1115Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8PV4_0271/C1/1131:1138No text annotation
homologous
HL_5TBW_026
NA
HL_8PV4_0281/C1/1222:1232No text annotation
homologous
HL_8C3A_027
NA
HL_8PV4_0291/C1/1250:1257GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8PV4_0301/C1/1330:1340Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_8PV4_0311/C1/1386:1391GNRA
homologous
HL_8C3A_030
NA
HL_8PV4_0321/C1/1445:1453T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8PV4_0331/C1/1489:1495Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8PV4_0341/C1/1527:1532GNRA variation
homologous
HL_8C3A_033
NA
HL_8PV4_0351/C1/1547:1554No text annotation
HL_8PV4_0361/C1/1579:1588No text annotation
homologous
HL_8C3A_035
NA
HL_8PV4_0371/C1/1614:1619GNRA
homologous
HL_8C3A_036
NA
HL_8PV4_0381/C1/1660:1668No text annotation
homologous
HL_8C3A_037
NA
HL_8PV4_0391/C1/1699:1705No text annotation
homologous
HL_5TBW_038
NA
HL_8PV4_0401/C1/1739:1746UNCG
geometric
HL_6JQ6_004
HL_61337.3
HL_8PV4_0411/C1/1772:1776No text annotation
homologous
HL_8C3A_040
NA
HL_8PV4_0421/C1/1824:1831No text annotation
homologous
HL_8C3A_041
NA
HL_8PV4_0431/C1/1842:1848GNRA
homologous
HL_5TBW_042
NA
HL_8PV4_0441/C1/1903:1908UNCG
homologous
HL_8C3A_043
NA
HL_8PV4_0461/C1/2073:2077No text annotation
geometric
HL_5J7L_143
NA
HL_8PV4_0471/C1/2098:2108No text annotation
homologous
HL_8C3A_046
NA
HL_8PV4_0831/C1/2127:2133GNRA
homologous
HL_8C3A_047
NA
HL_8PV4_0491/C1/2183:2188GNRA
homologous
HL_8C3A_048
NA
HL_8PV4_0521/C1/2332:2341No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_8PV4_0551/C1/2527:2533No text annotation
geometric
HL_5J7L_156
NA
HL_8PV4_0571/C1/2632:2640No text annotation
homologous
HL_8C3A_057
NA
HL_8PV4_0581/C1/2652:2659No text annotation
geometric
HL_5TBW_006
NA
HL_8PV4_0591/C1/2685:2691No text annotation
geometric
HL_4V9F_011
HL_75660.7
HL_8PV4_0601/C1/2703:2708GNRA
homologous
HL_8C3A_060
NA
HL_8PV4_0611/C1/2735:2743Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8PV4_0621/C1/2799:2807No text annotation
geometric
HL_5J7L_151
NA
HL_8PV4_0631/C1/2856:2863No text annotation
homologous
HL_5TBW_062
NA
HL_8PV4_0641/C1/2879:2885No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_8PV4_0651/C1/2922:2927GNRA
homologous
HL_8C3A_065
NA
HL_8PV4_0661/C1/2983:2988GNRA
geometric
HL_5J7L_003
NA
HL_8PV4_0671/C1/3026:3031Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8PV4_0681/C1/3068:3082No text annotation
homologous
HL_8C3A_068
NA
HL_8PV4_0691/C1/3143:3148UNCG
geometric
HL_5Y85_004
HL_61337.3
HL_8PV4_0701/C1/3182:3190No text annotation
geometric
HL_3SKL_006
NA
HL_8PV4_0711/C1/3244:3252No text annotation
geometric
HL_5J7L_201
NA
HL_8PV4_0731/C2/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_17803.1
HL_8PV4_0741/C2/69:89No text annotation
homologous
HL_8P9A_187
HL_68571.1
HL_8PV4_0751/C2/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8PV4_0761/C2/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_8PV4_0841/C4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8PV4_0791/C4/36:41No text annotation
homologous
HL_8C3A_073
NA

Problematic loops

#loop idProblemSequence
HL_8PV4_013No text annotation
HL_8PV4_015No text annotation
HL_8PV4_021No text annotation
HL_8PV4_023Externally structured
HL_8PV4_024No text annotation
HL_8PV4_025T-loop related
HL_8PV4_045No text annotation
HL_8PV4_048GNRA with extra cWW
HL_8PV4_050No text annotation
HL_8PV4_051No text annotation
HL_8PV4_053No text annotation
HL_8PV4_054No text annotation
HL_8PV4_056UNCG variation
HL_8PV4_072Mini UNCG
HL_8PV4_077No text annotation
HL_8PV4_078GNRA
HL_8PV4_080GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8PV4_0011/C1/8:9,
1/C2/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_8PV4_0021/C1/14:16,
1/C2/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8PV4_0031/C1/28:29,
1/C1/57:59		No text annotation
homologous
IL_8C3A_004
NA
IL_8PV4_0041/C1/32:39,
1/C1/46:54		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_8PV4_0051/C1/83:90,
1/C1/98:104		No text annotation
homologous
IL_8C3A_006
NA
IL_8PV4_0061/C1/124:125,
1/C1/140:145		No text annotation
geometric
IL_5TBW_007
NA
IL_8PV4_0071/C1/126:128,
1/C1/137:139		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8PV4_0081/C1/155:156,
1/C1/253:255		Minor groove platform
geometric
IL_6DLR_003
IL_34520.3
IL_8PV4_0091/C1/158:160,
1/C1/250:251		Single stack bend
homologous
IL_5TBW_009
NA
IL_8PV4_0101/C1/164:165,
1/C1/241:246		No text annotation
IL_8PV4_0111/C1/168:171,
1/C1/235:238		Double sheared
geometric
IL_4KZD_002
IL_58355.2
IL_8PV4_0121/C1/174:175,
1/C1/230:232		Single stack bend
homologous
IL_8C3A_012
NA
IL_8PV4_0131/C1/176:179,
1/C1/226:229		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8PV4_0141/C1/183:185,
1/C1/198:199		Single bulged U
homologous
IL_8C3A_013
NA
IL_8PV4_0151/C1/330:332,
1/C2/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8PV4_0161/C1/369:372,
1/C1/383:396		No text annotation
homologous
IL_8C3A_015
NA
IL_8PV4_0171/C1/397:403,
1/C2/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8PV4_0181/C1/421:423,
1/C1/617:619		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8PV4_0191/C1/435:437,
1/C1/481:483		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_01003.3
IL_8PV4_0201/C1/446:451,
1/C1/466:472		No text annotation
IL_8PV4_0211/C1/508:516,
1/C1/558:565		No text annotation
homologous
IL_5TBW_019
NA
IL_8PV4_0221/C1/523:530,
1/C1/543:551		No text annotation
homologous
IL_5TBW_020
NA
IL_8PV4_0241/C1/658:660,
1/C1/772:774		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8PV4_0251/C1/668:672,
1/C1/684:688		No text annotation
homologous
IL_8C3A_024
NA
IL_8PV4_0261/C1/713:716,
1/C1/723:727		No text annotation
homologous
IL_8C3A_025
NA
IL_8PV4_0271/C1/734:735,
1/C1/761:763		Single bulged A
geometric
IL_7A0S_012
IL_14190.2
IL_8PV4_0281/C1/737:738,
1/C1/757:759		Single stack bend
geometric
IL_5J7L_032
NA
IL_8PV4_0291/C1/740:745,
1/C1/750:755		No text annotation
homologous
IL_5TBW_026
NA
IL_8PV4_1521/C1/785:787,
1/C1/920:922		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8PV4_1531/C1/787:791,
1/C1/913:920		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_8PV4_0311/C1/815:816,
1/C1/841:843		Single bulged G
geometric
IL_7A0S_017
IL_28408.2
IL_8PV4_0321/C1/816:820,
1/C1/837:841		Triple sheared
homologous
IL_8C3A_033
NA
IL_8PV4_0331/C1/851:854,
1/C1/870:872		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8PV4_0341/C1/855:857,
1/C1/868:869		Single bulged U
geometric
IL_7RQB_080
NA
IL_8PV4_0351/C1/889:891,
1/C1/901:905		No text annotation
homologous
IL_8C3A_036
NA
IL_8PV4_0361/C1/951:952,
1/C1/1094:1096		No text annotation
homologous
IL_8C3A_038
NA
IL_8PV4_0371/C1/958:964,
1/C1/1084:1088		No text annotation
IL_8PV4_0381/C1/965:967,
1/C1/1082:1083		Single bulged G
homologous
IL_8C3A_040
NA
IL_8PV4_0391/C1/973:979,
1/C1/1035:1041		No text annotation
homologous
IL_8C3A_041
NA
IL_8PV4_0431/C1/1103:1105,
1/C1/1119:1121		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8PV4_0441/C1/1150:1154,
1/C1/1311:1315		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8PV4_0451/C1/1156:1163,
1/C1/1308:1309		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8PV4_0461/C1/1163:1165,
1/C1/1307:1308		Single bulged U
geometric
IL_4V9F_039
IL_97561.3
IL_8PV4_0471/C1/1170:1177,
1/C1/1297:1302		No text annotation
homologous
IL_8C3A_054
NA
IL_8PV4_0481/C1/1177:1188,
1/C1/1282:1297		No text annotation
IL_8PV4_0491/C1/1190:1192,
1/C1/1279:1280		Single bulged U
homologous
IL_5TBW_053
NA
IL_8PV4_0501/C1/1201:1209,
1/C1/1266:1270		Kink-turn
homologous
IL_8C3A_057
NA
IL_8PV4_0511/C1/1217:1221,
1/C1/1233:1237		No text annotation
homologous
IL_8C3A_058
NA
IL_8PV4_0521/C1/1245:1249,
1/C1/1258:1260		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8PV4_0531/C1/1359:1361,
1/C1/1411:1414		No text annotation
homologous
IL_8C3A_061
NA
IL_8PV4_0541/C1/1368:1370,
1/C1/1403:1404		Single bulged A
homologous
IL_8C3A_062
NA
IL_8PV4_0551/C1/1371:1378,
1/C1/1398:1402		Kink-turn
homologous
IL_5TBW_059
NA
IL_8PV4_0561/C1/1381:1383,
1/C1/1394:1395		Single bulged A
homologous
IL_5TBW_060
NA
IL_8PV4_1541/C1/1427:1433,
1/C1/2317:2322		7x6 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_289
IL_02666.1
IL_8PV4_0591/C1/1475:1478,
1/C1/1815:1816		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.2
IL_8PV4_0601/C1/1484:1488,
1/C1/1496:1498		Minor groove platform
geometric
IL_4LFB_037
IL_61370.1
IL_8PV4_0611/C1/1515:1519,
1/C1/1565:1570		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8PV4_0621/C1/1598:1601,
1/C1/1804:1806		No text annotation
homologous
IL_8C3A_070
NA
IL_8PV4_0631/C1/1603:1604,
1/C1/1800:1802		Single bulged U
geometric
IL_2A64_002
IL_97561.3
IL_8PV4_0641/C1/1604:1605,
1/C1/1798:1800		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_8PV4_0651/C1/1607:1611,
1/C1/1791:1796		No text annotation
homologous
IL_5TBW_066
NA
IL_8PV4_0661/C1/1625:1629,
1/C1/1786:1790		Triple sheared
homologous
IL_8C3A_073
NA
IL_8PV4_0671/C1/1641:1643,
1/C1/1766:1768		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8PV4_0681/C1/1649:1650,
1/C1/1758:1760		Single bulged C
geometric
IL_5TBW_069
NA
IL_8PV4_0691/C1/1650:1651,
1/C1/1756:1758		Single stack bend
homologous
IL_8C3A_076
NA
IL_8PV4_0701/C1/1655:1657,
1/C1/1671:1673		Isolated non-canonical cWW pair
geometric
IL_5TBW_046
NA
IL_8PV4_0711/C1/1674:1678,
1/C1/1727:1732		No text annotation
homologous
IL_8C3A_077
NA
IL_8PV4_0721/C1/1682:1687,
1/C1/1717:1723		No text annotation
IL_8PV4_0731/C1/1691:1697,
1/C1/1707:1713		Kink-turn
homologous
IL_5TBW_073
NA
IL_8PV4_0741/C1/1863:1869,
1/C1/2309:2312		No text annotation
homologous
IL_8C3A_080
NA
IL_8PV4_0751/C1/1875:1877,
1/C1/2301:2303		Isolated tWW turn
geometric
IL_5TBW_075
NA
IL_8PV4_1551/C1/1878:1881,
1/C1/2299:2300		Major groove platform; stack outside cWW
geometric
IL_8C3A_082
NA
IL_8PV4_1561/C1/1878:1886,
1/C1/2296:2300		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_8PV4_0771/C1/1881:1886,
1/C1/2296:2299		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_8PV4_0791/C1/1898:1903,
1/C1/1908:1914		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_8PV4_0801/C1/1920:1922,
1/C1/2069:2071		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8PV4_0811/C1/1927:1928,
1/C1/2061:2064		No text annotation
homologous
IL_5TBW_080
NA
IL_8PV4_0821/C1/1932:1934,
1/C1/2050:2057		No text annotation
IL_8PV4_0841/C1/2091:2092,
1/C1/2286:2288		Single bulged A
homologous
IL_8C3A_087
NA
IL_8PV4_0851/C1/2119:2124,
1/C1/2136:2143		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8PV4_0891/C1/2169:2173,
1/C1/2198:2200		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_8PV4_0901/C1/2174:2180,
1/C1/2191:2197		No text annotation
homologous
IL_8C3A_093
NA
IL_8PV4_0911/C1/2354:2357,
1/C1/2945:2947		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_8PV4_0931/C1/2359:2360,
1/C1/2940:2943		Major groove platform
geometric
IL_4WF9_078
IL_48076.8
IL_8PV4_0951/C1/2372:2374,
1/C1/2770:2771		Single bulged U
geometric
IL_1S03_005
IL_97561.3
IL_8PV4_0961/C1/2375:2376,
1/C1/2766:2769		Minor groove platform
homologous
IL_8C3A_099
NA
IL_8PV4_0981/C1/2386:2388,
1/C1/2563:2566		No text annotation
homologous
IL_8C3A_100
NA
IL_8PV4_1021/C1/2483:2489,
1/C1/2543:2546		No text annotation
homologous
IL_8C3A_106
NA
IL_8PV4_1031/C1/2583:2585,
1/C1/2611:2612		No text annotation
IL_8PV4_1041/C1/2625:2627,
1/C1/2645:2649		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_8PV4_1051/C1/2679:2681,
1/C1/2695:2696		Single bulged A
geometric
IL_4V9F_098
IL_14190.2
IL_8PV4_1571/C1/2681:2683,
1/C1/2693:2695		Isolated non-canonical cWW pair
geometric
IL_8C3A_037
NA
IL_8PV4_1071/C1/2700:2701,
1/C1/2710:2712		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_8PV4_1081/C1/2719:2720,
1/C1/2757:2759		Single stack bend
geometric
IL_7RQB_058
NA
IL_8PV4_1581/C1/2719:2723,
1/C1/2753:2759		No text annotation
IL_8PV4_1091/C1/2720:2723,
1/C1/2753:2757		No text annotation
IL_8PV4_1101/C1/2729:2732,
1/C1/2746:2747		Multiple bulged bases
geometric
IL_5WLH_001
IL_71421.2
IL_8PV4_1111/C1/2794:2798,
1/C1/2808:2812		No text annotation
homologous
IL_8C3A_114
NA
IL_8PV4_1131/C1/2848:2850,
1/C1/2871:2873		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8PV4_1591/C1/2848:2851,
1/C1/2868:2873		No text annotation
homologous
IL_8P9A_338
IL_07469.3
IL_8PV4_1141/C1/2850:2851,
1/C1/2868:2871		Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_8PV4_1161/C1/2877:2879,
1/C1/2885:2887		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_8PV4_1181/C1/2919:2920,
1/C1/2929:2931		Minor groove platform
geometric
IL_7A0S_028
IL_34520.3
IL_8PV4_1191/C1/2962:2965,
1/C1/3097:3102		Double sheared
homologous
IL_8C3A_123
NA
IL_8PV4_1201/C1/2970:2972,
1/C1/2998:3000		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8PV4_1211/C1/2976:2983,
1/C1/2988:2994		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8PV4_1221/C1/3005:3009,
1/C1/3049:3052		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_8PV4_1231/C1/3012:3017,
1/C1/3042:3046		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8PV4_1241/C1/3021:3022,
1/C1/3035:3038		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8PV4_1251/C1/3061:3065,
1/C1/3085:3089		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8PV4_1261/C1/3118:3120,
1/C1/3225:3227		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8PV4_1271/C1/3121:3123,
1/C1/3223:3224		Single bulged U
geometric
IL_6UFG_004
IL_97561.3
IL_8PV4_1281/C1/3130:3132,
1/C1/3156:3157		Single bulged U
geometric
IL_5J7L_017
NA
IL_8PV4_1291/C1/3133:3141,
1/C1/3150:3155		No text annotation
IL_8PV4_1301/C1/3168:3174,
1/C1/3198:3203		No text annotation
IL_8PV4_1311/C1/3176:3178,
1/C1/3194:3196		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_8PV4_1321/C1/3241:3244,
1/C1/3252:3255		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_8PV4_1331/C1/3259:3261,
1/C1/3329:3330		Single bulged U
homologous
IL_8C3A_136
NA
IL_8PV4_1341/C1/3265:3266,
1/C1/3322:3325		Single bulged U
homologous
IL_5TBW_131
NA
IL_8PV4_1351/C1/3269:3271,
1/C1/3314:3319		No text annotation
homologous
IL_8C3A_138
NA
IL_8PV4_1361/C1/3273:3278,
1/C1/3308:3312		No text annotation
homologous
IL_8C3A_139
NA
IL_8PV4_1371/C1/3281:3283,
1/C1/3304:3305		Single bulged U
homologous
IL_8C3A_140
NA
IL_8PV4_1381/C1/3283:3286,
1/C1/3301:3304		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_8PV4_1401/C2/64:66,
1/C2/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8PV4_1411/C2/68:69,
1/C2/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_8PV4_1421/C3/28:29,
1/C3/55:58		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_8PV4_1431/C3/32:35,
1/C3/50:52		Other IL
geometric
IL_5TBW_064
NA
IL_8PV4_1461/C4/15:16,
1/C4/63:65		Single stack bend
geometric
IL_5J7L_032
NA
IL_8PV4_1471/C4/21:27,
1/C4/53:58		Minor groove platform related
homologous
IL_8C3A_144
NA
IL_8PV4_1481/C4/28:29,
1/C4/48:52		C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_8PV4_1491/C4/32:36,
1/C4/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_8PV4_1501/C4/72:79,
1/C4/99:105		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8PV4_1511/C4/82:84,
1/C4/95:96		No text annotation

Problematic loops

#loop idProblemSequence
IL_8PV4_023Isolated non-canonical cWW pair
IL_8PV4_030No text annotation
IL_8PV4_040Minor groove platform
IL_8PV4_041Isolated non-canonical cWW pair
IL_8PV4_042Single bulged G
IL_8PV4_0578x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_8PV4_058Isolated non-canonical cWW pair
IL_8PV4_076Major groove platform with extra pair
IL_8PV4_078Isolated non-canonical cWW pair
IL_8PV4_083Not an internal loop
IL_8PV4_086Major groove platform
IL_8PV4_087No text annotation
IL_8PV4_088Single bulged U
IL_8PV4_092Isolated non-canonical cWW pair
IL_8PV4_094Isolated non-canonical cWW pair
IL_8PV4_097Isolated non-canonical cWW pair
IL_8PV4_099Single bulged U
IL_8PV4_100Isolated non-canonical cWW contact
IL_8PV4_101No text annotation
IL_8PV4_106Tandem non-canonical cWW pairs
IL_8PV4_112No text annotation
IL_8PV4_115Not an internal loop
IL_8PV4_117No text annotation
IL_8PV4_139Multiple bulged bases
IL_8PV4_144Single bulged A
IL_8PV4_145No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8PV4_0011/C1/114:124,
1/C1/145:154,
1/C1/256:260		No text annotation
homologous
J3_8C3A_001
NA
J3_8PV4_0121/C1/114:125,
1/C1/140:154,
1/C1/256:260		No text annotation
J3_8PV4_0131/C1/180:183,
1/C1/199:208,
1/C1/220:225		No text annotation
J3_8PV4_0141/C1/333:349,
1/C1/356:361,
1/C2/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8PV4_0151/C1/362:369,
1/C1/396:397,
1/C2/19:20		No text annotation
geometric
J3_5J7L_036
NA
J3_8PV4_0161/C1/362:372,
1/C1/383:397,
1/C2/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_8PV4_0021/C1/428:434,
1/C1/484:486,
1/C1/606:612		No text annotation
J3_8PV4_0171/C1/493:494,
1/C1/579:588,
1/C1/594:599		No text annotation
homologous
J3_8P9A_048
J3_86133.1
J3_8PV4_0031/C1/796:802,
1/C1/887:889,
1/C1/905:908		No text annotation
homologous
J3_5TBW_004
NA
J3_8PV4_0041/C1/810:813,
1/C1/845:849,
1/C1/874:879		No text annotation
homologous
J3_5TBW_005
NA
J3_8PV4_0181/C1/968:969,
1/C1/1045:1049,
1/C1/1075:1081		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8PV4_0051/C1/1213:1215,
1/C1/1239:1245,
1/C1/1260:1262		No text annotation
homologous
J3_5TBW_007
NA
J3_8PV4_0061/C1/1462:1468,
1/C1/1837:1839,
1/C1/1851:1854		No text annotation
homologous
J3_8C3A_006
NA
J3_8PV4_0071/C1/1471:1474,
1/C1/1817:1823,
1/C1/1832:1834		No text annotation
homologous
J3_8C3A_007
NA
J3_8PV4_0191/C1/1509:1514,
1/C1/1571:1575,
1/C1/1592:1593		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8PV4_0201/C1/1521:1525,
1/C1/1534:1543,
1/C1/1558:1563		No text annotation
J3_8PV4_0211/C1/1611:1612,
1/C1/1621:1625,
1/C1/1790:1791		No text annotation
homologous
J3_8C3A_054
NA
J3_8PV4_0221/C1/1634:1638,
1/C1/1771:1772,
1/C1/1776:1781		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8PV4_0081/C1/2395:2398,
1/C1/2475:2480,
1/C1/2549:2556		No text annotation
homologous
J3_8C3A_008
NA
J3_8PV4_0091/C1/2492:2495,
1/C1/2508:2523,
1/C1/2537:2540		No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_8PV4_0101/C1/2623:2625,
1/C1/2649:2651,
1/C1/2660:2665		No text annotation
homologous
J3_8C3A_010
NA
J3_8PV4_0111/C1/2845:2848,
1/C1/2873:2875,
1/C1/2889:2895		No text annotation
homologous
J3_8C3A_011
NA
J3_8PV4_0231/C1/3125:3130,
1/C1/3157:3165,
1/C1/3206:3221		No text annotation
J3_8PV4_0241/C1/3239:3240,
1/C1/3256:3259,
1/C1/3330:3333		No text annotation
J3_8PV4_0251/C2/44:45,
1/C2/58:64,
1/C2/96:100		No text annotation
homologous
J3_8P4V_024
NA
J3_8PV4_0261/C4/9:14,
1/C4/66:67,
1/C4/110:111		No text annotation
homologous
J3_8C3A_059
NA
J4_8PV4_0011/C1/113:114,
1/C1/260:265,
1/C1/286:292,
1/C1/309:312		No text annotation
homologous
J4_8C3A_001
NA
J4_8PV4_0021/C1/180:183,
1/C1/199:202,
1/C1/206:208,
1/C1/220:225		No text annotation
J4_8PV4_0031/C1/1434:1440,
1/C1/1458:1459,
1/C1/1857:1860,
1/C1/2315:2316		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_8PV4_0041/C1/1475:1479,
1/C1/1503:1508,
1/C1/1594:1595,
1/C1/1809:1816		No text annotation
J4_8PV4_0051/C1/1478:1479,
1/C1/1503:1508,
1/C1/1594:1595,
1/C1/1809:1815		No text annotation
J4_8PV4_0061/C1/1654:1655,
1/C1/1673:1674,
1/C1/1732:1733,
1/C1/1752:1753		No text annotation
homologous
J4_8P9A_016
J4_75575.1
J4_8PV4_0071/C1/2379:2382,
1/C1/2570:2578,
1/C1/2716:2718,
1/C1/2760:2763		No text annotation
J4_8PV4_0081/C1/2967:2970,
1/C1/3000:3001,
1/C1/3056:3058,
1/C1/3092:3095		No text annotation
J5_8PV4_0011/C1/21:23,
1/C2/35:42,
1/C2/102:107,
1/C2/115:116,
1/C2/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8PV4_0021/C1/646:651,
1/C1/781:784,
1/C1/923:927,
1/C1/1357:1359,
1/C1/1414:1420		No text annotation
J5_8PV4_0031/C1/663:666,
1/C1/690:694,
1/C1/701:709,
1/C1/731:733,
1/C1/764:769		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_8PV4_0041/C1/1886:1894,
1/C1/1918:1919,
1/C1/2072:2073,
1/C1/2077:2085,
1/C1/2294:2296		No text annotation
homologous
J5_8C3A_004
NA
J5_8PV4_0051/C1/2581:2582,
1/C1/2613:2617,
1/C1/2671:2676,
1/C1/2699:2700,
1/C1/2712:2713		No text annotation
J6_8PV4_0011/C1/23:28,
1/C1/59:69,
1/C1/76:80,
1/C1/107:111,
1/C1/314:324,
1/C2/32:35		No text annotation
J7_8PV4_0011/C1/931:938,
1/C1/947:950,
1/C1/1097:1100,
1/C1/1124:1129,
1/C1/1140:1144,
1/C1/1321:1322,
1/C1/1348:1353		No text annotation

Problematic loops

No problematic loops


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