HL_8PV4_013

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|C|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_013 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1587

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8PV4|1|C1|C|534
8PV4|1|C1|U|535
8PV4|1|C1|C|536
8PV4|1|C1|C|537
8PV4|1|C1|G|538
8PV4|1|C1|G|539

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein