HL_8PV4_033

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG(OMC)GGUU

Length

7 nucleotides

Bulged bases

8PV4|1|C1|G|1490, 8PV4|1|C1|U|1494

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1616

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8PV4|1|C1|A|1489
8PV4|1|C1|G|1490
8PV4|1|C1|OMC|1491
8PV4|1|C1|G|1492
8PV4|1|C1|G|1493
8PV4|1|C1|U|1494
8PV4|1|C1|U|1495

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19