HL_8PV4_034

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_034 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0686

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV4|1|C1|G|1527
8PV4|1|C1|A|1528
8PV4|1|C1|A|1529
8PV4|1|C1|G|1530
8PV4|1|C1|U|1531
8PV4|1|C1|U|1532

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LN

Ribosomal protein L15

Chain Lj

Ribosomal protein L37