HL_8PV4_037

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_037 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.0722

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV4|1|C1|G|1614
8PV4|1|C1|G|1615
8PV4|1|C1|C|1616
8PV4|1|C1|A|1617
8PV4|1|C1|A|1618
8PV4|1|C1|C|1619

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

Ribosomal protein l34-like protein