HL_8PV4_057

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1848

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PV4|1|C1|A|2632
8PV4|1|C1|A|2633
8PV4|1|C1|C|2634
8PV4|1|C1|A|2635
8PV4|1|C1|G|2636
8PV4|1|C1|A|2637
8PV4|1|C1|A|2638
8PV4|1|C1|A|2639
8PV4|1|C1|U|2640

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LJ

Putative ribosomal protein