HL_8PV4_059

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG(OMU)G(OMU)G

Length

7 nucleotides

Bulged bases

8PV4|1|C1|G|2687, 8PV4|1|C1|G|2689

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_059 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1072

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PV4|1|C1|C|2685
8PV4|1|C1|A|2686
8PV4|1|C1|G|2687
8PV4|1|C1|OMU|2688
8PV4|1|C1|G|2689
8PV4|1|C1|OMU|2690
8PV4|1|C1|G|2691

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein