HL_8PV4_068
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8PV4|1|C1|G|3074, 8PV4|1|C1|C|3078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_068 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1264
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8PV4|1|C1|C|3068
8PV4|1|C1|U|3069
8PV4|1|C1|G|3070
8PV4|1|C1|A|3071
8PV4|1|C1|A|3072
8PV4|1|C1|C|3073
8PV4|1|C1|G|3074
8PV4|1|C1|C|3075
8PV4|1|C1|C|3076
8PV4|1|C1|U|3077
8PV4|1|C1|C|3078
8PV4|1|C1|U|3079
8PV4|1|C1|A|3080
8PV4|1|C1|A|3081
8PV4|1|C1|G|3082
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cz
- rRNA-processing protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
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