HL_8PV4_069

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|C|3145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_069 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.09

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8PV4|1|C1|C|3143
8PV4|1|C1|U|3144
8PV4|1|C1|C|3145
8PV4|1|C1|C|3146
8PV4|1|C1|G|3147
8PV4|1|C1|G|3148

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LS

60S ribosomal protein L20