HL_8PV4_071

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8PV4|1|C1|C|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_071 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1078

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8PV4|1|C1|G|3244
8PV4|1|C1|C|3245
8PV4|1|C1|A|3246
8PV4|1|C1|G|3247
8PV4|1|C1|A|3248
8PV4|1|C1|C|3249
8PV4|1|C1|G|3250
8PV4|1|C1|A|3251
8PV4|1|C1|C|3252

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein