HL_8PV4_074
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8PV4|1|C2|U|82, 8PV4|1|C2|C|84, 8PV4|1|C2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_074 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.5742
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PV4|1|C2|U|69
8PV4|1|C2|G|70
8PV4|1|C2|A|71
8PV4|1|C2|A|72
8PV4|1|C2|U|73
8PV4|1|C2|U|74
8PV4|1|C2|G|75
8PV4|1|C2|C|76
8PV4|1|C2|A|77
8PV4|1|C2|G|78
8PV4|1|C2|A|79
8PV4|1|C2|A|80
8PV4|1|C2|U|81
8PV4|1|C2|U|82
8PV4|1|C2|C|83
8PV4|1|C2|C|84
8PV4|1|C2|G|85
8PV4|1|C2|U|86
8PV4|1|C2|G|87
8PV4|1|C2|A|88
8PV4|1|C2|A|89
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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