HL_8PV4_076
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAUUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_076 not in the Motif Atlas
- Homologous match to HL_5TBW_076
- Geometric discrepancy: 0.2106
- The information below is about HL_5TBW_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_45177.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PV4|1|C2|G|124
8PV4|1|C2|U|125
8PV4|1|C2|A|126
8PV4|1|C2|U|127
8PV4|1|C2|U|128
8PV4|1|C2|C|129
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CJ
- Pescadillo homolog
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LX
- 60S ribosomal protein L25-like protein
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