HL_8PV4_080

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_080 not in the Motif Atlas

Homologous match to HL_8C3A_074

Geometric discrepancy: 0.2653

The information below is about HL_8C3A_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8PV4|1|C4|G|87
8PV4|1|C4|G|88
8PV4|1|C4|U|89
8PV4|1|C4|G|90
8PV4|1|C4|A|91
8PV4|1|C4|C|92

Current chains

Chain C4

5S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain CU

Pre-rRNA-processing protein IPI3

Chain CW

Pre-rRNA-processing protein RIX1