HL_8PV5_062
3D structure
- PDB id
- 8PV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8PV5|1|C1|G|2857
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV5_062 not in the Motif Atlas
- Homologous match to HL_5TBW_062
- Geometric discrepancy: 0.2393
- The information below is about HL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79150.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8PV5|1|C1|A|2856
8PV5|1|C1|G|2857
8PV5|1|C1|C|2858
8PV5|1|C1|A|2859
8PV5|1|C1|G|2860
8PV5|1|C1|A|2861
8PV5|1|C1|A|2862
8PV5|1|C1|U|2863
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain LH
- 60S ribosomal protein l9-like protein
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