HL_8PV6_054
3D structure
- PDB id
- 8PV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- 8PV6|1|C1|A|2653, 8PV6|1|C1|A|2655, 8PV6|1|C1|A|2656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV6_054 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2821
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8PV6|1|C1|C|2652
8PV6|1|C1|A|2653
8PV6|1|C1|A|2654
8PV6|1|C1|A|2655
8PV6|1|C1|A|2656
8PV6|1|C1|G|2657
8PV6|1|C1|G|2658
8PV6|1|C1|G|2659
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CR
- Protein SDA1
- Chain CS
- Pre-rRNA-processing protein IPI1
- Chain Cz
- rRNA-processing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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