HL_8PV6_055

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

U(OMU)U(OMU)G(OMU)GA

Length

8 nucleotides

Bulged bases

8PV6|1|C1|U|2684, 8PV6|1|C1|G|2689

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_055 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.242

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PV6|1|C1|U|2682
8PV6|1|C1|OMU|2683
8PV6|1|C1|U|2684
8PV6|1|C1|OMU|2688
8PV6|1|C1|G|2689
8PV6|1|C1|OMU|2690
8PV6|1|C1|G|2691
8PV6|1|C1|A|2692

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29