HL_8PV6_057

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGAAAUUUG

Length

9 nucleotides

Bulged bases

8PV6|1|C1|G|2736

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_057 not in the Motif Atlas

Homologous match to HL_8C3A_061

Geometric discrepancy: 0.1125

The information below is about HL_8C3A_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8PV6|1|C1|C|2735
8PV6|1|C1|G|2736
8PV6|1|C1|A|2737
8PV6|1|C1|A|2738
8PV6|1|C1|A|2739
8PV6|1|C1|U|2740
8PV6|1|C1|U|2741
8PV6|1|C1|U|2742
8PV6|1|C1|G|2743

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein

Chain Li

60S ribosomal protein L36