HL_8PV6_069
3D structure
- PDB id
- 8PV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV6_069 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.2352
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8PV6|1|C2|C|47
8PV6|1|C2|A|48
8PV6|1|C2|G|49
8PV6|1|C2|C|50
8PV6|1|C2|G|51
8PV6|1|C2|A|52
8PV6|1|C2|A|53
8PV6|1|C2|A|54
8PV6|1|C2|U|55
8PV6|1|C2|G|56
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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