HL_8PV7_013

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8PV7|1|C1|C|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV7_013 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1484

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PV7|1|C1|C|534
8PV7|1|C1|U|535
8PV7|1|C1|C|536
8PV7|1|C1|C|537
8PV7|1|C1|G|538
8PV7|1|C1|G|539

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein