HL_8PV8_033

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CACUCGUG

Length

8 nucleotides

Bulged bases

8PV8|1|C1|U|1553

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV8_033 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1924

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PV8|1|C1|C|1547
8PV8|1|C1|A|1548
8PV8|1|C1|C|1549
8PV8|1|C1|U|1550
8PV8|1|C1|C|1551
8PV8|1|C1|G|1552
8PV8|1|C1|U|1553
8PV8|1|C1|G|1554

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L25-like protein

Chain Lr

60S ribosomal protein L41-A