HL_8PV8_043

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV8_043 not in the Motif Atlas

Homologous match to HL_8C3A_044

Geometric discrepancy: 0.5712

The information below is about HL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28980.2

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8PV8|1|C1|G|1932
8PV8|1|C1|G|1933
8PV8|1|C1|U|2054
8PV8|1|C1|A|2055
8PV8|1|C1|A|2056
8PV8|1|C1|C|2057

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19