HL_8PV8_072

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8PV8|1|C2|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV8_072 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.1226

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PV8|1|C2|G|124
8PV8|1|C2|U|125
8PV8|1|C2|A|126
8PV8|1|C2|U|127
8PV8|1|C2|U|128
8PV8|1|C2|C|129

Current chains

Chain C2

5.8S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Lr

60S ribosomal protein L41-A