HL_8PVA_008

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_008 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0656

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PVA|1|A|A|320
8PVA|1|A|A|321
8PVA|1|A|C|322
8PVA|1|A|U|323
8PVA|1|A|G|324
8PVA|1|A|A|325
8PVA|1|A|G|326
8PVA|1|A|A|327
8PVA|1|A|C|328
8PVA|1|A|A|329
8PVA|1|A|C|330
8PVA|1|A|G|331
8PVA|1|A|G|332
8PVA|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20