HL_8PVA_009

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8PVA|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_009 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.0864

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8PVA|1|A|C|342
8PVA|1|A|U|343
8PVA|1|A|A|344
8PVA|1|A|C|345
8PVA|1|A|G|346
8PVA|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19