HL_8PVA_015
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVA_015 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.0666
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8PVA|1|A|C|689
8PVA|1|A|G|690
8PVA|1|A|G|691
8PVA|1|A|U|692
8PVA|1|A|G|693
8PVA|1|A|A|694
8PVA|1|A|A|695
8PVA|1|A|A|696
8PVA|1|A|U|697
8PVA|1|A|G|698
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein uS11
- Chain U
- Small ribosomal subunit protein bS21
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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