HL_8PVA_016

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_016 not in the Motif Atlas

Geometric match to HL_5J7L_016

Geometric discrepancy: 0.0648

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8PVA|1|A|C|726
8PVA|1|A|G|727
8PVA|1|A|A|728
8PVA|1|A|A|729
8PVA|1|A|G|730
8PVA|1|A|G|731

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15

Chain U

Small ribosomal subunit protein bS21