HL_8PVA_023

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8PVA|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_023 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.0702

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8PVA|1|A|G|1089
8PVA|1|A|U|1090
8PVA|1|A|U|1091
8PVA|1|A|A|1092
8PVA|1|A|A|1093
8PVA|1|A|G|1094
8PVA|1|A|U|1095
8PVA|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein bS21